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robert-mcdermott/cytoweave

Free, open-source flow cytometry analysis workbench for conventional, spectral and mass cytometry. Gating, compensation, spectral unmixing, QC, clustering/UMAP, statistics and publication figures. Reads/writes FlowJo & Gating-ML. Runs locally, your data never leaves your machine. Includes MCP server for AI agents, and Python and R API clients.

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