genomoncology/biomcp
BioMCP: Biomedical Model Context Protocol
Overview
genomoncology/biomcp is a Rust MCP server licensed under MIT. BioMCP: Biomedical Model Context Protocol Topics: ai, bioinformatics, clinical-trials, genomics, llm, mcp, mcp-server, medical, model-context-protocol, pubmed, pubmed-central.
Ranked #73 out of 25632 indexed tools.
In the top 1% of all indexed tools.
Has 10 contributors.
Actively maintained with commits in the last week.
Ecosystem
Rust MIT
aibioinformaticsclinical-trialsgenomicsllmmcpmcp-servermedicalmodel-context-protocolpubmedpubmed-central
Signal Breakdown
Stars 460
Freshness 2d ago
Issue Health 100%
Contributors 10
Dependents 0
Forks 86
Description Brief
License MIT
How to Improve
Description low impact
Dependents medium impact
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From the README
# BioMCP
BioMCP is a single-binary CLI and MCP server for querying biomedical databases.
One command grammar, compact markdown output, 12 remote entities across 15+ data sources, plus local study analytics.
## Install
### PyPI tool install
```bash
uv tool install biomcp-cli
# or: pip install biomcp-cli
```
This installs the `biomcp` binary on your PATH.
### Binary install
```bash
curl -fsSL https://biomcp.org/install.sh | bash
```
### Install skills
Install guided investigation workflows into your agent directory:
```bash
biomcp skill install ~/.claude --force
```
### MCP clients
```json
{
"mcpServers": {
"biomcp": {
"command": "biomcp",
"args": ["serve"]
}
}
}
```
### Remote HTTP server
For shared or remote deployments:
```bash
biomcp serve-http --host 127.0.0.1 --port 8080
```
Remote clients connect to `http://127.0.0.1:8080/mcp`. Probe routes are
`GET /health`, `GET /readyz`, and `GET /`.
Runnable demo:
```bash
uv run --script demo/streamabl Read full README on GitHub →
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