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genomoncology/biomcp

Score: 61.0 Rank #73

BioMCP: Biomedical Model Context Protocol

Overview

genomoncology/biomcp is a Rust MCP server licensed under MIT. BioMCP: Biomedical Model Context Protocol Topics: ai, bioinformatics, clinical-trials, genomics, llm, mcp, mcp-server, medical, model-context-protocol, pubmed, pubmed-central.

Ranked #73 out of 25632 indexed tools.

In the top 1% of all indexed tools.

Has 10 contributors.

Actively maintained with commits in the last week.

Ecosystem

Rust MIT
aibioinformaticsclinical-trialsgenomicsllmmcpmcp-servermedicalmodel-context-protocolpubmedpubmed-central

Signal Breakdown

Stars 460
Freshness 2d ago
Issue Health 100%
Contributors 10
Dependents 0
Forks 86
Description Brief
License MIT

How to Improve

Description low impact

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Dependents medium impact

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Matched Queries

"model context protocol""model-context-protocol"

From the README

# BioMCP

BioMCP is a single-binary CLI and MCP server for querying biomedical databases.
One command grammar, compact markdown output, 12 remote entities across 15+ data sources, plus local study analytics.

## Install

### PyPI tool install

```bash
uv tool install biomcp-cli
# or: pip install biomcp-cli
```

This installs the `biomcp` binary on your PATH.

### Binary install

```bash
curl -fsSL https://biomcp.org/install.sh | bash
```

### Install skills

Install guided investigation workflows into your agent directory:

```bash
biomcp skill install ~/.claude --force
```

### MCP clients

```json
{
  "mcpServers": {
    "biomcp": {
      "command": "biomcp",
      "args": ["serve"]
    }
  }
}
```

### Remote HTTP server

For shared or remote deployments:

```bash
biomcp serve-http --host 127.0.0.1 --port 8080
```

Remote clients connect to `http://127.0.0.1:8080/mcp`. Probe routes are
`GET /health`, `GET /readyz`, and `GET /`.

Runnable demo:

```bash
uv run --script demo/streamabl
Read full README on GitHub →
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